This is a comprehensive list of publications referencing PsychENCODE grants. Publications are ordered by date where the most recent 20 are shown. See the link below for a full list of publications through PubMed.

  1. Luo, J, Li, L, Niu, M et al. (2024). Genetic regulation of human brain proteome reveals proteins implicated in psychiatric disorders. Mol Psychiatry,. doi: 10.1038/s41380-024-02576-8.
  2. Dai, R, Zhang, M, Chu, T et al. (2024). Precision and Accuracy of Single-Cell/Nuclei RNA Sequencing Data. bioRxiv,. doi: 10.1101/2024.04.12.589216.
  3. Pan, Y, Wang, X, Sun, J et al. (2024). Multimodal joint deconvolution and integrative signature selection in proteomics. Commun Biol7,493. doi: 10.1038/s42003-024-06155-z.
  4. Roussos, P, Ma, Y, Girdhar, K et al. (2024). Sex differences in brain cell-type specific chromatin accessibility in schizophrenia. Res Sq,. doi: 10.21203/rs.3.rs-4158509/v1.
  5. Zachariou, M, Loizidou, EM, Spyrou, GM et al. (2024). Immediate-Early Genes as Influencers in Genetic Networks and their Role in Alzheimer's Disease. bioRxiv,. doi: 10.1101/2024.03.29.586739.
  6. Emani, PS, Liu, JJ, Clarke, D et al. (2024). Single-cell genomics and regulatory networks for 388 human brains. bioRxiv,. doi: 10.1101/2024.03.18.585576.
  7. Li, R, Ernst, J (2024). Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence and sex information. bioRxiv,. doi: 10.1101/2024.03.20.585624.
  8. Leventhal, MJ, Zanella, CA, Kang, B et al. (2024). A systems-biology approach connects aging mechanisms with Alzheimer's disease pathogenesis. bioRxiv,. doi: 10.1101/2024.03.17.585262.
  9. Fleck, K, Luria, V, Garag, N et al. (2024). Functional associations of evolutionarily recent human genes exhibit sensitivity to the 3D genome landscape and disease. bioRxiv,. doi: 10.1101/2024.03.17.585403.
  10. Chen, AB, Yu, X, Thapa, KS et al. (2024). Functional 3'-UTR Variants Identify Regulatory Mechanisms Impacting Alcohol Use Disorder and Related Traits. bioRxiv,. doi: 10.1101/2024.01.31.578270.
  11. Truong, TTT, Liu, ZSJ, Panizzutti, B et al. (2024). Network-based drug repurposing for schizophrenia. Neuropsychopharmacology49,983-992. doi: 10.1038/s41386-024-01805-6.
  12. Raabe, FJ, Hausruckinger, A, Gagliardi, M et al. (2024). Polygenic risk for schizophrenia converges on alternative polyadenylation as molecular mechanism underlying synaptic impairment. bioRxiv,. doi: 10.1101/2024.01.09.574815.
  13. Vochteloo, M, Deelen, P, Vink, B et al. (2024). PICALO: principal interaction component analysis for the identification of discrete technical, cell-type, and environmental factors that mediate eQTLs. Genome Biol25,29. doi: 10.1186/s13059-023-03151-0.
  14. Chandrashekar, PB, Alatkar, S, Wang, J et al. (2023). DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction. Genome Med15,88. doi: 10.1186/s13073-023-01248-6.
  15. Girdhar, K, Bendl, J, Baumgartner, A et al. (2023). The neuronal chromatin landscape in adult schizophrenia brains is linked to early fetal development. Res Sq,. doi: 10.21203/rs.3.rs-3393581/v1.
  16. Girdhar, K, Bendl, J, Baumgartner, A et al. (2023). The neuronal chromatin landscape in adult schizophrenia brains is linked to early fetal development. medRxiv,. doi: 10.1101/2023.10.02.23296067.
  17. Liang, Q, Jiang, Y, Shieh, AW et al. (2023). The impact of common variants on gene expression in the human brain: from RNA to protein to schizophrenia risk. bioRxiv,. doi: 10.1101/2023.06.04.543603.
  18. Radulescu, E, Chen, Q, Pergola, G et al. (2023). Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia. PLoS Genet19,e1010989. doi: 10.1371/journal.pgen.1010989.
  19. Zhu, K, Bendl, J, Rahman, S et al. (2023). Multi-omic profiling of the developing human cerebral cortex at the single-cell level. Sci Adv9,eadg3754. doi: 10.1126/sciadv.adg3754.
  20. Rahman, S, Dong, P, Apontes, P et al. (2023). Lineage specific 3D genome structure in the adult human brain and neurodevelopmental changes in the chromatin interactome. Nucleic Acids Res51,11142-11161. doi: 10.1093/nar/gkad798.
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